GP-2796 - Refactor DockingApplicationLayout to be more generic

Ghidra/Features/DebugUtils/src/main/java/db/DbViewer.java

@@ -27,11 +27,11 @@ import javax.swing.table.TableModel;
 
 import db.buffers.LocalBufferFile;
 import docking.framework.DockingApplicationConfiguration;
-import docking.framework.DockingApplicationLayout;
 import docking.widgets.combobox.GComboBox;
 import docking.widgets.filechooser.GhidraFileChooser;
 import docking.widgets.label.GDLabel;
 import docking.widgets.label.GLabel;
+import generic.application.GenericApplicationLayout;
 import ghidra.app.plugin.debug.dbtable.DbLargeTableModel;
 import ghidra.app.plugin.debug.dbtable.DbSmallTableModel;
 import ghidra.framework.Application;
@@ -238,7 +238,7 @@ public class DbViewer extends JFrame {
 	 * @param table
 	 * @return arrays containing statistics. Element 0 provides
 	 * statsitics for primary table, element 1 provides combined
-	 * statsitics for all index tables.  Remaining array elements 
+	 * statsitics for all index tables.  Remaining array elements
 	 * should be ignored since they have been combined into element 1.
 	 */
 	private TableStatistics[] getStats(Table table) {
@@ -268,7 +268,7 @@ public class DbViewer extends JFrame {
 	 */
 	public static void main(String[] args) throws IOException {
 
-		ApplicationLayout layout = new DockingApplicationLayout("DB Viewer", "1.0");
+		ApplicationLayout layout = new GenericApplicationLayout("DB Viewer", "1.0");
 
 		DockingApplicationConfiguration configuration = new DockingApplicationConfiguration();
 		configuration.setShowSplashScreen(false);

Ghidra/Framework/Docking/src/main/java/docking/framework/AboutDialog.java

@@ -21,14 +21,15 @@ import javax.swing.*;
 
 import docking.DialogComponentProvider;
 import docking.DockingWindowManager;
+import generic.application.GenericApplicationLayout;
 import generic.theme.GThemeDefaults.Colors;
 import ghidra.framework.Application;
 import utility.application.ApplicationLayout;
 
 /**
- * Splash screen window to display version information about the current release of 
+ * Splash screen window to display version information about the current release of
  * the Ghidra application. The window is displayed when Ghidra starts; when
- * initialization is complete, the splash screen is dismissed. 
+ * initialization is complete, the splash screen is dismissed.
  */
 public class AboutDialog extends DialogComponentProvider {
 
@@ -68,7 +69,7 @@ public class AboutDialog extends DialogComponentProvider {
 	}
 
 	public static void main(String[] args) throws Exception {
-		ApplicationLayout layout = new DockingApplicationLayout("About Dialog", "1.0");
+		ApplicationLayout layout = new GenericApplicationLayout("About Dialog", "1.0");
 		DockingApplicationConfiguration config = new DockingApplicationConfiguration();
 		config.setShowSplashScreen(false);
 		Application.initializeApplication(layout, config);

Ghidra/Framework/Docking/src/main/java/docking/framework/SplashScreen.java

@@ -24,6 +24,7 @@ import javax.swing.border.BevelBorder;
 
 import docking.*;
 import docking.widgets.label.GDLabel;
+import generic.application.GenericApplicationLayout;
 import generic.theme.GColor;
 import generic.theme.Gui;
 import generic.util.WindowUtilities;
@@ -317,7 +318,7 @@ public class SplashScreen extends JWindow {
 	}
 
 	public static void main(String[] args) throws Exception {
-		ApplicationLayout layout = new DockingApplicationLayout("Splash Screen Main", "1.0");
+		ApplicationLayout layout = new GenericApplicationLayout("Splash Screen Main", "1.0");
 		DockingApplicationConfiguration config = new DockingApplicationConfiguration();
 
 		config.setShowSplashScreen(false);

Ghidra/Framework/Generic/src/main/java/generic/application/GenericApplicationLayout.java

@@ -13,7 +13,7 @@
  * See the License for the specific language governing permissions and
  * limitations under the License.
  */
-package docking.framework;
+package generic.application;
 
 import java.io.File;
 import java.io.FileNotFoundException;
@@ -33,10 +33,11 @@ import utility.module.ClasspathFilter;
 import utility.module.ModuleUtilities;
 
 /**
- * The docking application layout defines the customizable elements of a docking application's
+ * A low-level implementation of {@link ApplicationLayout} that is suitable for basic applications.
- * directory structure.
+ * This class makes use of the {@link GModule Module} system to find application components at
+ * runtime.
  */
-public class DockingApplicationLayout extends ApplicationLayout {
+public class GenericApplicationLayout extends ApplicationLayout {
 
 	private static final String NO_RELEASE_NAME = "NO_RELEASE";
 
@@ -45,30 +46,30 @@ public class DockingApplicationLayout extends ApplicationLayout {
 		Pattern.compile(".*/(\\w+)/bin/main");
 
 	/**
-	 * Constructs a new docking application layout object with the given name and version.
+	 * Constructs a new application layout object with the given name and version.
 	 *
 	 * @param name The name of the application.
 	 * @param version The version of the application.
 	 * @throws FileNotFoundException if there was a problem getting a user directory.
 	 */
-	public DockingApplicationLayout(String name, String version) throws FileNotFoundException {
+	public GenericApplicationLayout(String name, String version) throws FileNotFoundException {
 		this(new ApplicationProperties(name, version, NO_RELEASE_NAME));
 	}
 
 	/**
-	 * Constructs a new docking application layout object with the given set of application
+	 * Constructs a new application layout object with the given set of application
 	 * properties.  The default Ghidra application root directory(s) will be used.
 	 *
 	 * @param applicationProperties The properties object that will be read system properties.
 	 * @throws FileNotFoundException if there was a problem getting a user directory.
 	 */
-	public DockingApplicationLayout(ApplicationProperties applicationProperties)
+	public GenericApplicationLayout(ApplicationProperties applicationProperties)
 			throws FileNotFoundException {
 		this(getDefaultApplicationRootDirs(), applicationProperties);
 	}
 
 	/**
-	 * Constructs a new docking application layout object with the given set of application
+	 * Constructs a new application layout object with the given set of application
 	 * properties.
 	 *
 	 * @param applicationRootDirs list of application root directories which should be
@@ -77,7 +78,7 @@ public class DockingApplicationLayout extends ApplicationLayout {
 	 * @param applicationProperties The properties object that will be read system properties.
 	 * @throws FileNotFoundException if there was a problem getting a user directory.
 	 */
-	public DockingApplicationLayout(Collection<ResourceFile> applicationRootDirs,
+	public GenericApplicationLayout(Collection<ResourceFile> applicationRootDirs,
 			ApplicationProperties applicationProperties) throws FileNotFoundException {
 
 		this.applicationProperties = Objects.requireNonNull(applicationProperties);
@@ -128,8 +129,8 @@ public class DockingApplicationLayout extends ApplicationLayout {
 			ModuleUtilities.findModuleRootDirectories(applicationRootDirs, new ArrayList<>());
 		Map<String, GModule> allModules = ModuleUtilities.findModules(applicationRootDirs, roots);
 
-		// Filter any modules found to ensure that we only include those that are listed on the 
+		// Filter any modules found to ensure that we only include those that are listed on the
-		// classpath.  (Due to the nature of how the development classpath is created, not all 
+		// classpath.  (Due to the nature of how the development classpath is created, not all
 		// found modules may match the classpath entries.)
 		Set<String> cpNames = getClassPathModuleNames();
 		Map<String, GModule> filteredModules = new HashMap<>();

Ghidra/Framework/Generic/src/main/java/ghidra/framework/Application.java

@@ -29,10 +29,10 @@ import utility.application.ApplicationLayout;
 import utility.module.ModuleUtilities;
 
 /**
- * The Application class provides a variety of static convenience methods for accessing Application 
+ * The Application class provides a variety of static convenience methods for accessing Application
  * elements that can be used once the {@link #initializeApplication} call has been made.
  *
- * <p>In order to initialize an application, an {@link ApplicationLayout} and an 
+ * <p>In order to initialize an application, an {@link ApplicationLayout} and an
  * {@link ApplicationConfiguration} must be provided.  The layout and configuration come in a
  * variety of flavors, and are what makes the Application class usable across a range of tools.
  *
@@ -59,7 +59,7 @@ public class Application {
 
 	/**
 	 * Creates a new application object.  Application is a singleton so this is private.
-	 * 
+	 *
 	 * @param layout The application layout to be used by this application.
 	 * @param configuration The application configuration to be used by this application.
 	 */
@@ -102,8 +102,8 @@ public class Application {
 
 	/**
 	 * Initializes the application.  The static methods of this class cannot be used until the
-	 * application is initialized.  
+	 * application is initialized.
-	 * 
+	 *
 	 * @param layout The application layout to be used by the application.
 	 * @param configuration The application configuration to be used by the application.
 	 */
@@ -123,7 +123,7 @@ public class Application {
 
 	/**
 	 * Checks to see if the application has been initialized.
-	 * 
+	 *
 	 * @return true if the application has been initialized; otherwise, false.
 	 */
 	public static boolean isInitialized() {
@@ -150,12 +150,12 @@ public class Application {
 
 	/**
 	 * If the Application was previously initialized with logging disabled, this method
-	 * may be used to perform delayed logging initialization.  
+	 * may be used to perform delayed logging initialization.
 	 * @param logFile application log file, if null the default <i>application.log</i> will be stored
 	 * within the user's application settings directory
 	 * @param scriptLogFile scripting log file, if null the default <i>script.log</i> will be stored
 	 * within the user's application settings directory
-	 * @throws AssertException if Application has not yet been initialized, or logging 
+	 * @throws AssertException if Application has not yet been initialized, or logging
 	 * was previously configured for the application.
 	 */
 	public static void initializeLogging(File logFile, File scriptLogFile) {
@@ -170,7 +170,7 @@ public class Application {
 		}
 		if (scriptLogFile == null) {
 			// Some clients pass null for the script file, as they do not support scripting.  In
-			// that case, just have the system use the application log as the script log.  This 
+			// that case, just have the system use the application log as the script log.  This
 			// prevents the logging system from creating an oddly named log file.
 			scriptLogFile = logFile;
 		}
@@ -328,8 +328,7 @@ public class Application {
 		return null;
 	}
 
-	private List<ResourceFile> findFilesByExtensionInModule(String moduleName, String extension)
+	private List<ResourceFile> findFilesByExtensionInModule(String moduleName, String extension) {
-			throws IllegalArgumentException {
 		extension = verifyExtension(extension);
 		List<ResourceFile> list = new ArrayList<>();
 		GModule gModule = app.layout.getModules().get(moduleName);
@@ -479,7 +478,7 @@ public class Application {
 			file = getModuleFile(module, "os/" + Platform.WIN_X86_32.getDirectoryName(),
 				exactFilename);
 		}
-		
+
 		// Allow mac_x86_64 to be used for mac_arm_64 as fallback (requires macOS Rosetta 2)
 		if (file == null && Platform.CURRENT_PLATFORM == Platform.MAC_ARM_64) {
 			file = getModuleFile(module, "build/os/" + Platform.MAC_X86_64.getDirectoryName(),
@@ -493,7 +492,7 @@ public class Application {
 		if (file == null) {
 			throw new OSFileNotFoundException(moduleName, exactFilename);
 		}
-		
+
 		return file;
 	}
 
@@ -523,7 +522,7 @@ public class Application {
 		if (file == null && Platform.CURRENT_PLATFORM == Platform.WIN_X86_64) {
 			file = findModuleFile("os/" + Platform.WIN_X86_32.getDirectoryName(), path);
 		}
-		
+
 		// Allow mac_x86_64 to be used for mac_arm_64 as fallback (requires macOS Rosetta 2)
 		if (file == null && Platform.CURRENT_PLATFORM == Platform.MAC_ARM_64) {
 			file = findModuleFile("build/os/" + Platform.MAC_X86_64.getDirectoryName(), path);
@@ -591,19 +590,19 @@ public class Application {
 		return app.layout.getApplicationRootDirs();
 	}
 
-	/** 
+	/**
 	 * Returns the application root directory.   An application root directory is a
-	 * directory containing one or more modules.  In development mode there may be multiple 
+	 * directory containing one or more modules.  In development mode there may be multiple
-	 * application root directories, which can be retrieved via 
+	 * application root directories, which can be retrieved via
 	 * {@link #getApplicationRootDirectories()}.
 	 * <p>
 	 * In an installation of the application, there will only be one application root directory.
 	 * <p>
 	 * <b>Note:  Be sure you understand that there may be multiple application root
-	 * directories in development mode.</b>  In general you should not be using this method for 
+	 * directories in development mode.</b>  In general you should not be using this method for
-	 * searching for files yourself, but instead using 
+	 * searching for files yourself, but instead using
-	 * the various <code>find*</code> methods of this class.    
+	 * the various <code>find*</code> methods of this class.
-	 * 
+	 *
 	 * @return Returns the application root directory.
 	 * @see #getApplicationRootDirectories()
 	 */
@@ -624,11 +623,11 @@ public class Application {
 	/**
 	 * Returns the temporary directory specific to the user and the application.
 	 * Directory has name of &lt;username&gt;-&lt;appname&gt;
-	 * This directory may be removed at system reboot or during periodic 
+	 * This directory may be removed at system reboot or during periodic
 	 * system cleanup of unused temp files.
 	 * This directory is specific to the application name but not the version.
-	 * Resources stored within this directory should utilize some 
+	 * Resources stored within this directory should utilize some
-	 * form of access locking or unique naming.  Transient resources should be 
+	 * form of access locking or unique naming.  Transient resources should be
 	 * deleted when no longer in use.
 	 * @return temp directory
 	 */
@@ -639,12 +638,12 @@ public class Application {
 
 	/**
 	 * Returns the cache directory specific to the user and the application.
-	 * The intention is for directory contents to be preserved, however the 
+	 * The intention is for directory contents to be preserved, however the
 	 * specific location is platform specific and contents may be removed when
 	 * not in use and may in fact be the same directory the user temp directory.
 	 * This directory is specific to the application name but not the version.
-	 * Resources stored within this directory should utilize some 
+	 * Resources stored within this directory should utilize some
-	 * form of access locking and/or unique naming. 
+	 * form of access locking and/or unique naming.
 	 * @return cache directory
 	 */
 	public static File getUserCacheDirectory() {
@@ -672,7 +671,7 @@ public class Application {
 	 * Returns the installation directory.  In an installation, there is only one application root
 	 * and its parent is the installation directory.  If not an installation, then this call doesn't
 	 * really make sense, but it will return the parent of the first installation root.
-	 * @return
+	 * @return the directory
 	 */
 	public static ResourceFile getInstallationDirectory() {
 		checkAppInitialized();
@@ -697,8 +696,8 @@ public class Application {
 	 */
 	public static boolean isTestBuild() {
 		checkAppInitialized();
-		String value = app.layout.getApplicationProperties().getProperty(
+		String value = app.layout.getApplicationProperties()
-			ApplicationProperties.TEST_RELEASE_PROPERTY);
+				.getProperty(ApplicationProperties.TEST_RELEASE_PROPERTY);
 		if (value == null) {
 			return false;
 		}
@@ -707,7 +706,7 @@ public class Application {
 
 	/**
 	 * Checks whether or not the application is in "single jar" mode.
-	 * 
+	 *
 	 * @return true if the application is in "single jar" mode; otherwise, false.
 	 */
 	public static boolean inSingleJarMode() {
@@ -818,8 +817,7 @@ public class Application {
 	 * @param extension the filename extension for which to find file.s
 	 * @return a list of all files with the given extension that are located in the named module.
 	 */
-	public static List<ResourceFile> findFilesByExtension(String moduleName, String extension)
+	public static List<ResourceFile> findFilesByExtension(String moduleName, String extension) {
-			throws IllegalArgumentException {
 		checkAppInitialized();
 		return app.findFilesByExtensionInModule(moduleName, extension);
 	}
@@ -839,6 +837,7 @@ public class Application {
 	/**
 	 * Returns the directory relative to the calling class's module's data directory.
 	 * @param relativePath the path relative the module's data directory
+	 * @return the directory
 	 * @throws FileNotFoundException if the directory does not exist.
 	 * @throws IOException if an error occurred trying to access the directory.
 	 */
@@ -857,8 +856,9 @@ public class Application {
 	/**
 	 * Return the directory relative the the name module's data directory. (i.e. "/data" will
 	 * be prepended to the given path)
-	 * @param moduleName the name of the module. 
+	 * @param moduleName the name of the module.
 	 * @param relativePath the path relative to the module's data directory.
+	 * @return @return the directory
 	 * @throws FileNotFoundException if the directory does not exist
 	 * @throws IOException if an error occurred trying to access the directory.
 	 */
@@ -870,8 +870,9 @@ public class Application {
 
 	/**
 	 * Return the directory relative the the name module's directory.
-	 * @param moduleName the name of the module. 
+	 * @param moduleName the name of the module.
 	 * @param relativePath the path relative to the module's root directory.
+	 * @return the directory
 	 * @throws FileNotFoundException if the directory does not exist
 	 * @throws IOException if an error occurred trying to access the directory.
 	 */
@@ -884,6 +885,7 @@ public class Application {
 	/**
 	 * Returns the file relative to the calling class's module's data directory
 	 * @param relativeDataPath the path relative the to module's data directory
+	 * @return the file
 	 * @throws FileNotFoundException if the file or module does not exist.
 	 */
 	public static ResourceFile getModuleDataFile(String relativeDataPath)
@@ -902,6 +904,7 @@ public class Application {
 	 * be prepended to the give path)
 	 * @param moduleName the name of the module.
 	 * @param relativeDataPath the path relative to the module's data directory.
+	 * @return the file
 	 * @throws FileNotFoundException if the file does not exist.
 	 */
 	public static ResourceFile getModuleDataFile(String moduleName, String relativeDataPath)
@@ -914,6 +917,7 @@ public class Application {
 	 * Returns the file relative to the named module's directory.
 	 * @param moduleName the name of the module.
 	 * @param relativePath the path relative to the module's data directory.
+	 * @return the file
 	 * @throws FileNotFoundException if the file does not exist.
 	 */
 	public static ResourceFile getModuleFile(String moduleName, String relativePath)
@@ -924,7 +928,7 @@ public class Application {
 
 	/**
 	 * Returns the OS specific file within the given module with the given name.
-	 * 
+	 *
 	 * @param moduleName the name of the module
 	 * @param exactFilename the name of the OS file within the module.
 	 * @return the OS specific file.
@@ -938,7 +942,7 @@ public class Application {
 	/**
 	 * Returns the specified OS specific file.  It is first searched for in the calling class's
 	 * module.  If it is not found there, it is searched for in all modules.
-	 * 
+	 *
 	 * @param exactFilename the name of the OS specific file.
 	 * @return the OS specific file.
 	 * @throws OSFileNotFoundException if the file does not exist.
@@ -953,7 +957,7 @@ public class Application {
 				// not found in my module...fall through
 			}
 		}
-		
+
 		// We are either not in a module (perhaps script?) or it was not found in my module
 		return app.getOSFileInAnyModule(exactFilename);
 	}

Ghidra/Framework/Help/src/main/java/help/GHelpBuilder.java

@@ -21,6 +21,7 @@ import java.nio.file.Path;
 import java.nio.file.Paths;
 import java.util.*;
 
+import generic.application.GenericApplicationLayout;
 import generic.theme.ApplicationThemeManager;
 import ghidra.framework.Application;
 import ghidra.framework.ApplicationConfiguration;
@@ -77,7 +78,8 @@ public class GHelpBuilder {
 				return false;
 			}
 		};
-		Application.initializeApplication(new HelpApplicationLayout("Help Builder", "0.1"), config);
+		Application.initializeApplication(new GenericApplicationLayout("Help Builder", "0.1"),
+			config);
 
 		builder.build(args);
 	}

Ghidra/Framework/Help/src/main/java/help/HelpApplicationLayout.java

@@ -1,154 +0,0 @@
-/* ###
- * IP: GHIDRA
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- * 
- *      http://www.apache.org/licenses/LICENSE-2.0
- * 
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-package help;
-
-import java.io.File;
-import java.io.FileNotFoundException;
-import java.util.*;
-import java.util.Map.Entry;
-import java.util.regex.Matcher;
-import java.util.regex.Pattern;
-
-import generic.jar.ResourceFile;
-import ghidra.framework.ApplicationProperties;
-import ghidra.framework.GModule;
-import ghidra.util.SystemUtilities;
-import util.CollectionUtils;
-import utility.application.ApplicationLayout;
-import utility.application.ApplicationUtilities;
-import utility.module.ClasspathFilter;
-import utility.module.ModuleUtilities;
-
-//
-// TODO this class should be deleted when the GP-1981 branch is merged into master. The 
-//      DockingApplicationLayout is not accessible by help, due to Docking depending on Help.
-//      Much of the application layout code should live in Utility so that it is reachable by more
-//      modules.   Docking and Ghidra application layout classes should also have their names 
-//      changed.   
-//
-// 		Perhaps: ModuleAppliactionLayout and ClasspathApplicationLayout.
-//
-public class HelpApplicationLayout extends ApplicationLayout {
-
-	private static final String NO_RELEASE_NAME = "NO_RELEASE";
-
-	/** Dev mode main source bin dir pattern */
-	private static final Pattern CLASS_PATH_MODULE_NAME_PATTERN =
-		Pattern.compile(".*/(\\w+)/bin/main");
-
-	/**
-	 * Constructs a new docking application layout object with the given name and version.
-	 *
-	 * @param name The name of the application.
-	 * @param version The version of the application.
-	 * @throws FileNotFoundException if there was a problem getting a user directory.
-	 */
-	public HelpApplicationLayout(String name, String version) throws FileNotFoundException {
-
-		this.applicationProperties =
-			Objects.requireNonNull(new ApplicationProperties(name, version, NO_RELEASE_NAME));
-		this.applicationRootDirs = getDefaultApplicationRootDirs();
-		applicationRootDirs.addAll(getAdditionalApplicationRootDirs(applicationRootDirs));
-
-		// Application installation directory
-		applicationInstallationDir = applicationRootDirs.iterator().next().getParentFile();
-		if (SystemUtilities.isInDevelopmentMode()) {
-			applicationInstallationDir = applicationInstallationDir.getParentFile();
-		}
-
-		// Modules
-		if (SystemUtilities.isInDevelopmentMode()) {
-
-			// In development mode we rely on the IDE's classpath to determine which modules to
-			// include, as opposed to scanning the filesystem.  This prevents unrelated modules
-			// from being used.
-
-			modules = ModuleUtilities.findModules(applicationRootDirs,
-				ModuleUtilities.findModuleRootDirectories(applicationRootDirs),
-				new ClasspathFilter());
-		}
-		else {
-			modules = ModuleUtilities.findModules(applicationRootDirs, applicationRootDirs);
-		}
-
-		// User directories
-		userTempDir = ApplicationUtilities.getDefaultUserTempDir(applicationProperties);
-		userSettingsDir = ApplicationUtilities.getDefaultUserSettingsDir(applicationProperties,
-			applicationInstallationDir);
-	}
-
-	protected Collection<ResourceFile> getAdditionalApplicationRootDirs(
-			Collection<ResourceFile> roots) {
-		return Collections.emptyList();
-	}
-
-	protected Map<String, GModule> findModules() {
-		if (!SystemUtilities.isInDevelopmentMode()) {
-			// in release mode we only have one application root, so no need to find all others
-			return ModuleUtilities.findModules(applicationRootDirs, applicationRootDirs);
-		}
-
-		// In development mode we may have multiple module root directories under which modules may
-		// be found.  Search all roots for modules.
-		Collection<ResourceFile> roots =
-			ModuleUtilities.findModuleRootDirectories(applicationRootDirs, new ArrayList<>());
-		Map<String, GModule> allModules = ModuleUtilities.findModules(applicationRootDirs, roots);
-
-		// Filter any modules found to ensure that we only include those that are listed on the 
-		// classpath.  (Due to the nature of how the development classpath is created, not all 
-		// found modules may match the classpath entries.)
-		Set<String> cpNames = getClassPathModuleNames();
-		Map<String, GModule> filteredModules = new HashMap<>();
-		Set<Entry<String, GModule>> entrySet = allModules.entrySet();
-		for (Entry<String, GModule> entry : entrySet) {
-			GModule module = entry.getValue();
-			if (cpNames.contains(module.getName())) {
-				filteredModules.put(entry.getKey(), module);
-			}
-		}
-
-		return filteredModules;
-	}
-
-	private Set<String> getClassPathModuleNames() {
-		String cp = System.getProperty("java.class.path");
-		String[] pathParts = cp.split(File.pathSeparator);
-		Set<String> paths = new HashSet<>(Arrays.asList(pathParts));
-		Set<String> cpNames = new HashSet<>();
-		for (String cpEntry : paths) {
-			Matcher matcher = CLASS_PATH_MODULE_NAME_PATTERN.matcher(cpEntry);
-			if (matcher.matches()) {
-				cpNames.add(matcher.group(1));
-			}
-		}
-		return cpNames;
-	}
-
-	/**
-	 * Get the default list of Application directories.  In repo-based
-	 * development mode this includes the root Ghidra directory within each repo.
-	 * When not in development mode, the requirement is that the current working
-	 * directory correspond to the installation root.  The first entry will be
-	 * the primary root in both cases.
-	 * @return root directories
-	 */
-	public static Collection<ResourceFile> getDefaultApplicationRootDirs() {
-		if (SystemUtilities.isInDevelopmentMode()) {
-			return ApplicationUtilities.findDefaultApplicationRootDirs();
-		}
-		return CollectionUtils.asList(new ResourceFile(System.getProperty("user.dir")));
-	}
-}

Ghidra/Framework/Project/src/main/java/ghidra/framework/main/UserAgreementDialog.java

@@ -24,8 +24,8 @@ import javax.swing.text.html.HTMLEditorKit;
 import docking.DialogComponentProvider;
 import docking.DockingWindowManager;
 import docking.framework.DockingApplicationConfiguration;
-import docking.framework.DockingApplicationLayout;
 import docking.widgets.label.GDLabel;
+import generic.application.GenericApplicationLayout;
 import generic.theme.Gui;
 import ghidra.framework.Application;
 import ghidra.util.HTMLUtilities;
@@ -113,7 +113,7 @@ public class UserAgreementDialog extends DialogComponentProvider {
 	}
 
 	public static void main(String[] args) throws Exception {
-		ApplicationLayout layout = new DockingApplicationLayout("User Agreement Main", "1.0");
+		ApplicationLayout layout = new GenericApplicationLayout("User Agreement Main", "1.0");
 		DockingApplicationConfiguration config = new DockingApplicationConfiguration();
 		Application.initializeApplication(layout, config);
 		UserAgreementDialog dialog = new UserAgreementDialog(true, true);

Ghidra/Framework/Project/src/main/java/ghidra/framework/plugintool/StandAloneApplication.java

@@ -27,7 +27,9 @@ import org.jdom.Element;
 import org.jdom.input.SAXBuilder;
 import org.jdom.output.XMLOutputter;
 
-import docking.framework.*;
+import docking.framework.ApplicationInformationDisplayFactory;
+import docking.framework.DockingApplicationConfiguration;
+import generic.application.GenericApplicationLayout;
 import ghidra.framework.*;
 import ghidra.framework.model.ToolServices;
 import ghidra.util.Msg;
@@ -61,7 +63,7 @@ public abstract class StandAloneApplication implements GenericStandAloneApplicat
 	 * @throws IOException error causing application initialization failure
 	 */
 	public StandAloneApplication(String propertiesFilename) throws IOException {
-		this(new DockingApplicationLayout(readApplicationProperties(propertiesFilename)));
+		this(new GenericApplicationLayout(readApplicationProperties(propertiesFilename)));
 	}
 
 	/**
@@ -72,7 +74,7 @@ public abstract class StandAloneApplication implements GenericStandAloneApplicat
 	 * @throws IOException error causing application initialization failure
 	 */
 	public StandAloneApplication(String name, String version) throws IOException {
-		this(new DockingApplicationLayout(name, version));
+		this(new GenericApplicationLayout(name, version));
 	}
 
 	/**